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Genetic ablation of GIGYF1, associated with autism, causes behavioral and neurodevelopmental defects in zebrafish and mice

  • Author Footnotes
    12 These authors contributed equally
    Zijiao Ding
    Footnotes
    12 These authors contributed equally
    Affiliations
    Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China

    Department of Pathology, School of Basic Medicine, Anhui Medical University, Hefei, Anhui 230032, China
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  • Author Footnotes
    12 These authors contributed equally
    Guiyang Huang
    Footnotes
    12 These authors contributed equally
    Affiliations
    Department of Neurobiology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Author Footnotes
    12 These authors contributed equally
    Tianyun Wang
    Footnotes
    12 These authors contributed equally
    Affiliations
    Department of Medical Genetics, Center for Medical Genetics, Peking University Health Science Center, Beijing 100191, China

    Neuroscience Research Institute, Peking University; Key Laboratory for Neuroscience, Ministry of Education of China & National Health Commission of China, Beijing 100191, China

    Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA
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  • Weicheng Duan
    Affiliations
    Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Hua Li
    Affiliations
    Department of Physiology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Yirong Wang
    Affiliations
    Department of Physiology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Huiting Jia
    Affiliations
    Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Ziqian Yang
    Affiliations
    Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Kang Wang
    Affiliations
    Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Xufeng Chu
    Affiliations
    Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Evangeline C Kurtz-Nelson
    Affiliations
    Department of Psychiatry & Behavioral Sciences, University of Washington, Seattle, WA 98195, USA
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  • Author Footnotes
    † Present address: Department of Psychiatry, Geisel School of Medicine at Dartmouth, Dartmouth Hitchcock Medical Center, Lebanon, NH, USA
    Kaitlyn Ahlers
    Footnotes
    † Present address: Department of Psychiatry, Geisel School of Medicine at Dartmouth, Dartmouth Hitchcock Medical Center, Lebanon, NH, USA
    Affiliations
    Department of Psychiatry & Behavioral Sciences, University of Washington, Seattle, WA 98195, USA
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  • Rachel K Earl
    Affiliations
    Department of Psychiatry & Behavioral Sciences, University of Washington, Seattle, WA 98195, USA
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  • Yunyun Han
    Affiliations
    Department of Neurobiology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Pamela Feliciano
    Affiliations
    The Simons Foundation, New York, NY 10010, USA
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  • Wendy K Chung
    Affiliations
    The Simons Foundation, New York, NY 10010, USA

    Department of Pediatrics, Columbia University, New York, NY 10032, USA
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  • Evan E Eichler
    Affiliations
    Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA 98195, USA

    Howard Hughes Medical Institute, University of Washington, Seattle, WA 98195, USA
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  • Man Jiang
    Correspondence
    Correspondence to: (B.X.), (M.J.)
    Affiliations
    Department of Physiology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Bo Xiong
    Correspondence
    Correspondence to: (B.X.), (M.J.)
    Affiliations
    Department of Forensic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, Hubei, China
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  • Author Footnotes
    12 These authors contributed equally
    † Present address: Department of Psychiatry, Geisel School of Medicine at Dartmouth, Dartmouth Hitchcock Medical Center, Lebanon, NH, USA

      Abstract

      Background

      Autism spectrum disorder (ASD) is characterized by deficits in social communication and restricted or repetitive behaviors. Due to the extremely high genetic and phenotypic heterogeneity, it is critical to pinpoint the genetic factors for the understanding of the pathology of these disorders.

      Methods

      We analyzed the exomes generated by the SPARK project and performed a meta-analysis with previous data. We then generated a zebrafish knockout model and three mouse Gigyf1 knockout models to examine the function of GIGYF1 in neurodevelopment and behavior. Finally, we performed whole tissue and single-nuclei transcriptome analysis to explore the molecular and cellular function of GIGYF1.

      Results

      GIGYF1 variants are significantly associated with various NDD phenotypes including autism, global developmental delay, intellectual disability, sleep disturbance. Loss of GIGYF1 causes similar behavioral effects in zebrafish and mice, including elevated levels of anxiety and reduced social engagements, which is reminiscent of the behavioral deficits in human patients carrying GIGYF1 mutations. Moreover, excitatory neuron-specific Gigyf1 knockout mice recapitulate the increased repetitive behaviors and impaired social memory, suggesting a crucial role of Gigyf1 in excitatory neurons, which correlates with the observations in single nuclei RNAseq. We also identified a series of downstream target genes of GIGYF1 that affects many aspects of the nervous system especially synaptic transmission.

      Conclusion

      De novo variants (DNVs) of GIGYF1 are associated with NDDs including ASD. GIGYF1 is involved in neurodevelopment and animal behavior, potentially through regulating hippocampal CA2 neuronal numbers and disturbing synaptic transmission.

      Keywords

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