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Genome-wide survival study identifies PARL as a novel locus for clinical progression and neurodegeneration in Alzheimer’s disease

  • Author Footnotes
    † These authors contributed equally to this work.
    Shi-Dong Chen
    Footnotes
    † These authors contributed equally to this work.
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
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  • Author Footnotes
    † These authors contributed equally to this work.
    Wei Zhang
    Footnotes
    † These authors contributed equally to this work.
    Affiliations
    Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China
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  • Author Footnotes
    † These authors contributed equally to this work.
    Yi-Wei Feng
    Footnotes
    † These authors contributed equally to this work.
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
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  • Bang-Sheng Wu
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
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  • Liu Yang
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
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  • Ya-Ru Zhang
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
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  • Hui-Fu Wang
    Affiliations
    Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China
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  • Yu Guo
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
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  • Yue-Ting Deng
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
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  • Jian-Feng Feng
    Affiliations
    Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China

    Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai, China

    Fudan ISTBI—ZJNU Algorithm Centre for Brain-Inspired Intelligence, Zhejiang Normal University, Jinhua, China

    MOE Frontiers Center for Brain Science, Fudan University, Shanghai, China

    Zhangjiang Fudan International Innovation Center, Shanghai, China
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  • Wei Cheng
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China

    Institute of Science and Technology for Brain-Inspired Intelligence, Fudan University, Shanghai, China

    Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence, Fudan University, Ministry of Education, Shanghai, China

    Fudan ISTBI—ZJNU Algorithm Centre for Brain-Inspired Intelligence, Zhejiang Normal University, Jinhua, China
    Search for articles by this author
  • Qiang Dong
    Correspondence
    Correspondence to: Prof. Qiang Dong, Department of Neurology and Institute of Neurology, Huashan Hospital, Shanghai Medical College, Fudan University, 12th Wulumuqi Zhong Road, Shanghai 200040, China.
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
    Search for articles by this author
  • Jin-Tai Yu
    Correspondence
    Correspondence to: Prof. Jin-Tai YuDepartment of Neurology and Institute of Neurology, Huashan Hospital, Shanghai Medical College, Fudan University, 12th Wulumuqi Zhong Road, Shanghai 200040, China; (J.T. Yu)
    Affiliations
    Department of Neurology and Institute of Neurology, Huashan Hospital, State Key Laboratory of Medical Neurobiology and MOE Frontiers Center for Brain Science, Shanghai Medical College, Fudan University, National Center for Neurological Disorders, Shanghai, China
    Search for articles by this author
  • Author Footnotes
    † These authors contributed equally to this work.

      Abstract

      Background

      Variability exists in trajectories of Alzheimer’s disease (AD). We aimed to identify genetic modulators of clinical progression in AD.

      Methods

      We conducted the first genome-wide survival study on AD using a two-stage approach. The discovery and replication stage separately included 1,158 and 211,817 non-demented individuals from Alzheimer’s Disease Neuroimaging Initiative (ADNI) and the UK Biobank (UKB) (325 and 1,103 progressed in average follow-up of 4.33 and 8.63 years). Cox proportional hazards models were applied with time to AD dementia as the phenotype of clinical progression. A series of bioinformatic analyses and functional experiments were performed to validate the novel findings.

      Results

      We found that APOE and PARL (presenilin-associated rhomboid-like), a novel locus tagged by rs6795172 (Hazard ratio =1.66, P=1.45×10-9), were significantly associated with AD clinical progression, and were successfully replicated. The novel locus was linked to accelerated cognitive changes, higher tau levels, and faster atrophy of AD-specific brain structures which were also verified in UKB neuroimaging follow-up. Gene analysis and Summary-data-based Mendelian Randomization indicated PARL as the most functionally-relevant gene in the locus. Expression quantitative trait locus analyses and dual-luciferase reporter assays confirmed that PARL expression could be regulated by rs6795172. Three different AD mouse models consistently showed decreased PARL expression accompanied by elevated tau levels, and in vitro experiments revealed that knockdown/overexpression of PARL inversely changed tau levels.

      Conclusions

      Collectively, genetic, bioinformatic, and functional evidence suggests that PARL modulates clinical progression and neurodegeneration in AD. Targeting PARL may potentially modify Alzheimer’s progression and have implications for disease-modifying therapies.

      Keywords

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