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Techniques and Methods| Volume 72, ISSUE 8, P707-709, October 15, 2012

Estimating the Genetic Variance of Major Depressive Disorder Due to All Single Nucleotide Polymorphisms

      Genome-wide association studies of psychiatric disorders have been criticized for their lack of explaining a considerable proportion of the heritability established in twin and family studies. Genome-wide association studies of major depressive disorder in particular have so far been unsuccessful in detecting genome-wide significant single nucleotide polymorphisms (SNPs). Using two recently proposed methods designed to estimate the heritability of a phenotype that is attributable to genome-wide SNPs, we show that SNPs on current platforms contain substantial information concerning the additive genetic variance of major depressive disorder. To assess the consistency of these two methods, we analyzed four other complex phenotypes from different domains. The pattern of results is consistent with estimates of heritability obtained in twin studies carried out in the same population.

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      References

        • Kim Y.
        • Zervas S.
        • Trace S.E.
        • Sullivan P.F.
        Schizophrenia genetics: Where next?.
        Schizophr Bull. 2011; 37: 456-463
        • Sullivan P.F.
        • de Geus E.J.
        • Willemsen G.
        • James M.R.
        • Smit J.H.
        • Zandbelt T.
        • et al.
        Genome-wide association for major depressive disorder: A possible role for the presynaptic protein piccolo.
        Mol Psychiatry. 2009; 14: 359-375
        • Wray N.R.
        • Pergadia M.L.
        • Blackwood D.H.
        • Penninx B.W.
        • Gordon S.D.
        • Nyholt D.R.
        • et al.
        Genome-wide association study of major depressive disorder: New results, meta-analysis, and lessons learned.
        Mol Psychiatry. 2012; 17: 36-48
        • Yang J.
        • Benyamin B.
        • McEvoy B.P.
        • Gordon S.
        • Henders A.K.
        • Nyholt D.R.
        • et al.
        Common SNPs explain a large proportion of the heritability for human height.
        Nat Genet. 2010; 42: 565-569
        • So H.-C.
        • Li M.
        • Sham P.C.
        Uncovering the total heritability explained by all true susceptibility variants in a genome-wide association study.
        Genet Epidemiol. 2011; 35: 447-456
        • So H.C.
        • Gui A.H.
        • Cherny S.S.
        • Sham P.C.
        Evaluating the heritability explained by known susceptibility variants: A survey of ten complex diseases.
        Genet Epidemiol. 2011; 35: 310-317
        • Yang J.
        • Lee S.H.
        • Goddard M.E.
        • Visscher P.M.
        GCTA: A tool for genome-wide complex trait analysis.
        Am J Hum Genet. 2011; 88: 76-82
        • Lee S.H.
        • Wray N.R.
        • Goddard M.E.
        • Visscher P.M.
        Am J Hum Genet. 2011; 88: 294-305
        • Willemsen G.
        • Geus de E.J.C.
        • Bartels M.
        • Beijsterveldt van C.E.M.
        • Estourgie-van Burk A.I.
        • Brooks G.F.
        The Netherlands Twin Register Biobank: A resource for genetic epidemiological studies.
        Twin Res Hum Genet. 2010; 13: 231-245
        • Penninx B.W.
        • Beekman A.T.
        • Smit J.H.
        • Zitman F.G.
        • Nolen W.A.
        • Spinhoven P.
        The Netherlands Study of Depression and Anxiety (NESDA): Rationale, objectives and methods.
        Int J Meth Psychiatr Res. 2008; 17: 121-140
        • Anderson C.A.
        • Pettersson F.H.
        • Clarke G.M.
        • Cardon L.R.
        • Morris A.P.
        • Zondervan K.T.
        Data quality control in genetic case-control association studies.
        Nat Protoc. 2010; 5: 1564-1573
        • The International Schizophrenia Consortium
        Common polygenic variation contributes to risk of schizophrenia and bipolar disorder.
        Nature. 2009; 460: 748-752
        • Lee S.H.
        • Nyholt D.R.
        • Macgregor S.
        • Henders A.K.
        • Zondervan K.T.
        • Montgomery G.W.
        • Visscher P.M.
        A simple and fast two-locus quality control test to detect false positives due to batch effects in genome-wide association studies.
        Genet Epidemiol. 2010; 34: 854-862
        • Middeldorp C.M.
        • Birley A.J.
        • Cath D.C.
        • Gillespie N.A.
        • Willemsen G.
        • Statham D.J.
        • et al.
        Familial clustering of major depression and anxiety disorders in Australian and Dutch twins and siblings.
        Twin Res Hum Genet. 2005; 8: 609-615
        • Demirkan A.
        • Penninx B.W.J.H.
        • Hek K.
        • Wray N.R.
        • Amin N.
        • Aulchenko Y.S.
        • et al.
        Genetic risk profiles for depression and anxiety in adult and elderly cohorts.
        Mol Psychiatry. 2011; 16: 773-783
        • Manolio T.A.
        • Collins F.S.
        • Cox N.J.
        • Goldstein D.B.
        • Hindorff L.A.
        • Hunter D.J.
        • et al.
        Finding the missing heritability of complex diseases.
        Nature. 2009; 461: 747-753
        • Vink J.M.
        • Willemsen G.
        • Boomsma D.I.
        Heritability of smoking initiation and nicotine dependence.
        Behav Genet. 2005; 35: 397-406
        • Silventoinen K.
        • Sammalisto S.
        • Perola M.
        • Boomsma D.I.
        • Cornes B.K.
        • Davis C.
        • et al.
        Heritability of adult body height: a comparative study of twin cohorts in eight countries.
        Twin Res. 2003; 6: 399-408